Reproducibility in Medical Research:
A Case Study

Quarto + tidymodels + GitHub Actions

2024 R/Medicine Conference
Marly Gotti

About Me

Data Scientist at Apple

Senior Data Scientist, Biogen

Posit intern (tidymodels)

Executive member of the R Validation Hub

R, open source,
{ ML } \(\cap\) { cancer research }

Marly Gotti                

Status Quo in Medical Research



Reproducibility

Adhering to journal formatting Reproducibility

Introduction

Quarto Manuscripts + tidymodels + GitHub Actions


Case Study: Thyroid Cancer Prediction Using Quarto, tidymodels, and GitHub Actions